isclogotitleMigale Bioinformatics Facility

We provide several services for scientists to deal with life sciences data



Open infrastructure dedicated to life sciences data processing



Dissemination of expertise in bioinformatics



Design and development of bioinformatics applications



Data analysis

Our Services

Migale, one of the Collective Scientific Infrastructure of INRAE, is part of the BioinfOmics Research Infrastructure of INRAE for bioinformatics. It is also a member of IFB (Institut Français de Bioinformatique), the French bioinformatics infrastructure and associated facility of France Génomique, the French genomic infrastructure for which we contribute to support different developments in bioinformatics.
A free account gives you access to work and save directories for your data, and access to the computer farm for your analyses.
The cluster farm is composed of about a thousand cores organized in different queues. We use the Sun Grid Engine queuing system for managing jobs.
You have a free access to our Galaxy server. Galaxy allows non-bioinformaticians to easily run tools without technical knowledges.
Command line tools, R packages and Galaxy wrappers are available on request and accessible to all migale authenticated users.
We provide an access to a large set of public biological databanks including whole genomes, nucleic and proteic sequences and other resources. They are updated automatically with BioMaJ or upon request.
We write tutorials to help you get familiar with tools, best practices, languages, etc.
Each year, we offer our "Bioinformatics by practicing" cycle. This cycle covers a broad spectrum of bioinformatics. The modules mix theoretical part and practical work.
We answer to the most common questions regarding the technical difficulties you can go through on our infrastructure.
Find all the ways to contact us.

Planned shutdown of Web service

Submitted by dberry on
Migale web servers

Access to Migale web servers (Topaze, Tomcat server ...) will be unavailable on Thursday, July 15.

Expected duration of interruption

Start: 07/15/2021 8am

End (estimation) : 07/15/2021 1pm



Users affected by the incident

  • All users of the platform.


Cause

Maintenance operations on the virtualization infrastructure.

Planned shutdown of Shiny apps

Submitted by dberry on
Shiny

Access to the Shiny apps will not be possible on June 16th.

Expected duration of interruption

Start: 16/06/2021 2pm

End (estimation) : 16/06/2021 6pm



Users affected by the incident

  • Users of the Shiny apps


Cause

Update ShinyProxy to version 2.5.0




Thank you for your understanding

FROGS 3.2 now available

Submitted by orue on
frogs 3.2 update

The last available release has been installed on migale server and on Galaxy instance.

Major changes have been made since version 3.1. Some options have changed, and new tools are now available (details below).

SOP for 16S and ITS data anlysis are available at http://frogs.toulouse.inra.fr/

FROGS v3.1 is always available but is no more recommended. Galaxy users, be careful to choose the appropriate tools (section labels are named FROGS 3.2 or FROGS 3.1)